vsearch
tool for processing metagenomic sequences
Install
- All systems
-
curl cmd.cat/vsearch.sh
- Debian
-
apt-get install vsearch - Ubuntu
-
apt-get install vsearch - Kali Linux
-
apt-get install vsearch - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install vsearch - Dockerfile
- dockerfile.run/vsearch
vsearch
tool for processing metagenomic sequences
Versatile 64-bit multithreaded tool for processing metagenomic sequences, including searching, clustering, chimera detection, dereplication, sorting, masking and shuffling The aim of this project is to create an alternative to the USEARCH tool developed by Robert C. Edgar (2010). The new tool should: - have a 64-bit design that handles very large databases and much more than 4GB of memory - be as accurate or more accurate than usearch - be as fast or faster than usearch