web_pipeline

detect and analyze structural variants from a genome assembly

Install

All systems
curl cmd.cat/web_pipeline.sh
Debian Debian
apt-get install assemblytics
Ubuntu
apt-get install assemblytics
image/svg+xml Kali Linux
apt-get install assemblytics
Windows (WSL2)
sudo apt-get update sudo apt-get install assemblytics
Dockerfile
dockerfile.run/web_pipeline

assemblytics

detect and analyze structural variants from a genome assembly

Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.