wgsim_eval.pl

processing sequence alignments in SAM and BAM formats

Install

All systems
curl cmd.cat/wgsim_eval.pl.sh
Debian Debian
apt-get install samtools
Ubuntu
apt-get install samtools
image/svg+xml Kali Linux
apt-get install samtools
Fedora
dnf install samtools
OS X
brew install samtools
Raspbian
apt-get install samtools

samtools

processing sequence alignments in SAM and BAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM (not SAM) file on a remote FTP or HTTP server.