x-smile

Find statistically significant patterns in sequences

Install

All systems
curl cmd.cat/x-smile.sh
Debian Debian
apt-get install mlv-smile
Ubuntu
apt-get install mlv-smile
image/svg+xml Kali Linux
apt-get install mlv-smile
Windows (WSL2)
sudo apt-get update sudo apt-get install mlv-smile
Raspbian
apt-get install mlv-smile
Dockerfile
dockerfile.run/x-smile

mlv-smile

Find statistically significant patterns in sequences

Smile determines sequence motifs on the basis of a set of DNA, RNA or protein sequences. * No hard limit on the number of combinations of motifs to describe subsets of sequences. * The sequence alphabet may be specified. * The use of wildcards is supported. * Better determination of significance of motifs by simulation. * Introduction of a set of sequences with negative controls that should not match automatically determined motifs.