Honey.py
genomic structural variation discovery
Install
- All systems
-
curl cmd.cat/Honey.py.sh
- Debian
-
apt-get install pbhoney - Ubuntu
-
apt-get install pbhoney - Windows (WSL2)
-
sudo apt-get updatesudo apt-get install pbhoney - Raspbian
-
apt-get install pbhoney - Dockerfile
- dockerfile.run/Honey.py
pbhoney
genomic structural variation discovery
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants. PBHoney is part of the PBSuite.