SNAPCommand

Scalable Nucleotide Alignment Program

Install

All systems
curl cmd.cat/SNAPCommand.sh
Debian Debian
apt-get install snap-aligner
Ubuntu
apt-get install snap-aligner
image/svg+xml Kali Linux
apt-get install snap-aligner
Windows (WSL2)
sudo apt-get update sudo apt-get install snap-aligner
Dockerfile
dockerfile.run/SNAPCommand

snap-aligner

Scalable Nucleotide Alignment Program

SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing.