alignGFA

single molecule sequence assembler for genomes

Install

All systems
curl cmd.cat/alignGFA.sh
Debian Debian
apt-get install canu
Ubuntu
apt-get install canu
image/svg+xml Kali Linux
apt-get install canu
Windows (WSL2)
sudo apt-get update sudo apt-get install canu
Dockerfile
dockerfile.run/alignGFA

canu

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: * Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences