bamleftalign

Bayesian haplotype-based polymorphism discovery and genotyping

Install

All systems
curl cmd.cat/bamleftalign.sh
Debian Debian
apt-get install freebayes
Ubuntu
apt-get install freebayes
image/svg+xml Kali Linux
apt-get install freebayes
Windows (WSL2)
sudo apt-get update sudo apt-get install freebayes
Dockerfile
dockerfile.run/bamleftalign

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping

FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.