chainsaw
bayesian estimation of gene trees taking the species tree into account
Install
- All systems
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curl cmd.cat/chainsaw.sh
- Debian
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apt-get install prime-phylo - Ubuntu
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apt-get install prime-phylo - Kali Linux
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apt-get install prime-phylo - CentOS
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yum install log4j - Fedora
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dnf install log4j - Windows (WSL2)
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sudo apt-get updatesudo apt-get install prime-phylo - Raspbian
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apt-get install prime-phylo - Dockerfile
- dockerfile.run/chainsaw
prime-phylo
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees. The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
log4j
Log4j is a tool to help the programmer output log statements to a
variety of output targets.