soapdenovo-31mer

short-read assembly method to build de novo draft assembly

Install

All systems
curl cmd.cat/soapdenovo-31mer.sh
Debian Debian
apt-get install soapdenovo
Ubuntu
apt-get install soapdenovo
image/svg+xml Kali Linux
apt-get install soapdenovo
Windows (WSL2)
sudo apt-get update sudo apt-get install soapdenovo
Dockerfile
dockerfile.run/soapdenovo-31mer

soapdenovo

short-read assembly method to build de novo draft assembly

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. This version is not maintained anymore, consider using soapdenovo2.