spades
genome assembler for single-cell and isolates data sets
Install
- All systems
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curl cmd.cat/spades.sh
- Debian
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apt-get install spades - Ubuntu
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apt-get install spades - Kali Linux
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apt-get install spades - Windows (WSL2)
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sudo apt-get updatesudo apt-get install spades - OS X
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brew install spades - Dockerfile
- dockerfile.run/spades
spades
genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.