summarizeConsensus

Pacific Biosciences variant and consensus caller

Install

All systems
curl cmd.cat/summarizeConsensus.sh
Debian Debian
apt-get install pbgenomicconsensus
Ubuntu
apt-get install pbgenomicconsensus
Windows (WSL2)
sudo apt-get update sudo apt-get install pbgenomicconsensus
Raspbian
apt-get install pbgenomicconsensus
Dockerfile
dockerfile.run/summarizeConsensus

pbgenomicconsensus

Pacific Biosciences variant and consensus caller

The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides. This package is part of the SMRTAnalysis suite